PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3281_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 272aa MW: 30332.3 Da PI: 8.5512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3281_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.5e-06	114	133	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Neem_3281_f_1 114 FSCHVCFKTFNRYNNLQMHM 133 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.66E-5	107	136	No hit	No description
PROSITE profile	PS50157	10.055	114	141	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	114	133	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	116	136	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.65E-5	180	218	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEPSGFSSDD QSSSFAVSST NHTDIEPLDL FPSGAQNSNE SMLLPSCLHG STEAQLNENP 60 KAFNEEKEDV TVALHIGLPN YSRSSNNPNA SVAAATKQYW IPTPEQILIG LTHFSCHVCF 120 KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAILGRPC YCCAEGCKNN IENPKAKPLK 180 DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD 240 HIKAFGSGHG PFPPNSFDGV EVLEDASSSL LV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021285244.1	1e-156	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-112	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A061FFX4	1e-155	A0A061FFX4_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRING	EOY15971	1e-156	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]