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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Neem_32272_f_1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family |
AP2 |
Protein Properties |
Length: 276aa MW: 30969.7 Da PI: 7.9002 |
Description |
AP2 family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 42.3 | 1.8e-13 | 81 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Neem_32272_f_1 81 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 131
89********.7******5553..2.26**********99**********99776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MGISYLVDLS FQRVLLCGFD TAHAAARAYD RAAIKFRGVD ADINFSLADY EEDMKQMKNL 60 TKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR 120 AYDKAAIKCN GREAVTNFEP STYEGEINSE GSNEAGEHNL DLNLGISPTS GSGPKENEGH 180 PQFLSGPYGV YAGRNSMMEN FNAAAAGDSP SKGLMRTSEH PRFWNGVYPS FLRTEIHFKS 240 PEKGCLKQRG TLIENYFRFG KRDECLAYTV TEWPGR
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM437918 | 5e-97 | AM437918.1 Vitis vinifera contig VV78X091249.7, whole genome shotgun sequence. |