PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_32014_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 419aa MW: 45737.3 Da PI: 5.5897

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32014_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.3	8.7e-30	15	66	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Neem_32014_f_1 15 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 66 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	5	86	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-27	18	66	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-24	314	403	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.4E-26	316	398	No hit	No description
SMART	SM00666	2.6E-25	319	401	IPR000270	PB1 domain
PROSITE profile	PS51745	24.201	319	401	IPR000270	PB1 domain
Pfam	PF00564	1.2E-19	320	400	IPR000270	PB1 domain
CDD	cd06407	5.64E-33	320	400	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MNGPRRHMEK KRSTAEKNVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS 60 RKINKVNRSL RKIQTVLDSV QGVEGGLKFD PTTGGFVAAS SIIQEFGARK GFLLPEKSLP 120 RRNPETITED STSLAPTLCT DGEKTVVKVE EDERSMDTNQ VAQLKNMLIP NISEGELNQS 180 SVNPIDCSED SKLVSKDAGP FQPARLGTAA WLSPENASMG SYFARGKWAA LNKDSLKLES 240 SDCQFVSQSS YSFAAAEDID TRMEGDDGII EQNQPTTSSM TESSNGSGSL VHGSSSSSPS 300 FEEGKHSKIQ PSSCDSGSKI TVKATYKEDI IRFKFDPSVG CFQLYEEVGK RLKLQNGTFQ 360 LKYLDDEEEW VMLVSDSDLQ ECLEILDSIG TRSVKFLVRD VPCAVGSSGS SNCFLAGIS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MNGPRRHMEK KRSTAEKNVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS  60
RKINKVNRSL RKIQTVLDSV QGVEGGLKFD PTTGGFVAAS SIIQEFGARK GFLLPEKSLP  120
RRNPETITED STSLAPTLCT DGEKTVVKVE EDERSMDTNQ VAQLKNMLIP NISEGELNQS  180
SVNPIDCSED SKLVSKDAGP FQPARLGTAA WLSPENASMG SYFARGKWAA LNKDSLKLES  240
SDCQFVSQSS YSFAAAEDID TRMEGDDGII EQNQPTTSSM TESSNGSGSL VHGSSSSSPS  300
FEEGKHSKIQ PSSCDSGSKI TVKATYKEDI IRFKFDPSVG CFQLYEEVGK RLKLQNGTFQ  360
LKYLDDEEEW VMLVSDSDLQ ECLEILDSIG TRSVKFLVRD VPCAVGSSGS SNCFLAGIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024043640.1	0.0	protein NLP9 isoform X3
TrEMBL	A0A173G8J7	0.0	A0A173G8J7_PONTR; Transcription factor NLP8
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	6e-93	Nin-like family protein