PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_31989_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

YABBY

Protein Properties

Length: 173aa MW: 19316.3 Da PI: 9.2225

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31989_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	43	1.7e-13	34	73	22	61
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 + vsvP +s+f++vtvrCGhC++llsv++ + q++++++ Neem_31989_f_1 34 VYVSVPCSSMFNIVTVRCGHCANLLSVSMGSSLQTIPVQD 73 359*****************************99999987 PP
2	YABBY	122.5	6.5e-38	94	148	116	170
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Neem_31989_f_1 94 NAAPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 148 668**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-13	34	73	IPR006780	YABBY protein
Pfam	PF04690	2.9E-36	92	148	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	95	141	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.1E-5	96	142	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKPDLGTKVV GFVDGVYCYK FKCTTIWVET YVSVYVSVPC SSMFNIVTVR CGHCANLLSV 60 SMGSSLQTIP VQDPQLCLLP LKLTYLGFST VINNAAPEKR QRVPSAYNRF IKEEIQRIKA 120 SNPDISHREA FSTAAKNWAH FPHIHFGLKV DGNKQAKLDQ TFAEGTQKSS GFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015607.1	5e-72	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	5e-51	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A061GUT1	1e-70	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY33226	2e-71	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-49	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]