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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31982_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Trihelix | ||||||||
Protein Properties | Length: 249aa MW: 28053.9 Da PI: 9.4886 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.8 | 3e-18 | 86 | 197 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........................rergferspkqCkekwenlnkrykkikegek 69 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ ++++ +s +qCk+k++nl+kryk + ++++ Neem_31982_f_1 86 EWSDTAIACLLEAYTEKFNQLNRGNLRGRDWEEVAEAIiatvvminrnsrkrgkdnsnssndkqQQQKAWKSVEQCKNKIDNLKKRYKVELQRMN 180 5*************************************************************99999999******************9998888 PP trihelix 70 krtsessstcpyfdqlea 87 + +ss++ +f+q+ea Neem_31982_f_1 181 SS-GSASSNWHWFKQIEA 197 85.56777*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.9E-15 | 84 | 198 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MASQDYPLIA DPHAPTHLPQ TADSTTADYY AHSAFTTNEN SDADKSVSGS GSGSKRNPYY 60 YKKQKTGNTS ETASDYRVDY RKDREEWSDT AIACLLEAYT EKFNQLNRGN LRGRDWEEVA 120 EAIIATVVMI NRNSRKRGKD NSNSSNDKQQ QQKAWKSVEQ CKNKIDNLKK RYKVELQRMN 180 SSGSASSNWH WFKQIEAIMG SINNNSNLVN KSIVAETEER TGGAAASPIA VSPLTRQAKR 240 YMPFYNISV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436611.1 | 1e-101 | uncharacterized protein LOC18045004 | ||||
TrEMBL | A0A067EJI5 | 1e-100 | A0A067EJI5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QK41 | 1e-100 | A0A2H5QK41_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4TJA0 | 1e-100 | V4TJA0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006436611.1 | 1e-101 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23002 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 2e-40 | Trihelix family protein |