PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31916_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 398aa MW: 46269.5 Da PI: 8.333

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31916_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.3	8.4e-23	104	199	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li a+++m + ++ +k ++W+ vsk+m erg+++sp+qC++k++nlnk yk++++ +++ +++++++ ++d+ Neem_31916_f_1 104 KWTEKMVKLLISAVSYMRQFALSNVangknessllQKIGKWKLVSKVMVERGYNVSPQQCEDKFNNLNKSYKRLNDVLGRGtSCKVVENPELLDE 198 7************88764443212344667788********************************************66999999999988 PP trihelix 85 l 85 + Neem_31916_f_1 199 I 199 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.8E-21	104	225	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEGKSSLADG MITGELYDFQ DLEGEIQLRQ QQDPKFYQSS SAAEPQIGSV FPLRVQYMQG 60 KPGSFIDYDK DERGKKLILN CAVPGFDGHN DVGEGVGSPW QRIKWTEKMV KLLISAVSYM 120 RQFALSNVAN GKNESSLLQK IGKWKLVSKV MVERGYNVSP QQCEDKFNNL NKSYKRLNDV 180 LGRGTSCKVV ENPELLDEIN ISEKTKENVR KILSSKQLFF KEMCSYHNGN QLYLPHDPDL 240 QRSLQLALRK KHLSEPHSRW SKDDYFDEKD QDALADAQYV ETDNTNMKFL DHNETLEHHP 300 QYVSTDLGNV QPEGGNIDGL WQQWMGFRSC RLKLQKLQVK AQMLKLENQR FKWQSICWKQ 360 DRHINRMRLE NEHLKIENER MAMELKYKKM RADYNSAA

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEGKSSLADG MITGELYDFQ DLEGEIQLRQ QQDPKFYQSS SAAEPQIGSV FPLRVQYMQG  60
KPGSFIDYDK DERGKKLILN CAVPGFDGHN DVGEGVGSPW QRIKWTEKMV KLLISAVSYM  120
RQFALSNVAN GKNESSLLQK IGKWKLVSKV MVERGYNVSP QQCEDKFNNL NKSYKRLNDV  180
LGRGTSCKVV ENPELLDEIN ISEKTKENVR KILSSKQLFF KEMCSYHNGN QLYLPHDPDL  240
QRSLQLALRK KHLSEPHSRW SKDDYFDEKD QDALADAQYV ETDNTNMKFL DHNETLEHHP  300
QYVSTDLGNV QPEGGNIDGL WQQWMGFRSC RLKLQKLQVK AQMLKLENQR FKWQSICWKQ  360
DRHINRMRLE NEHLKIENER MAMELKYKKM RADYNSAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006495058.1	0.0	uncharacterized protein LOC102628040
TrEMBL	A0A067DWB0	0.0	A0A067DWB0_CITSI; Uncharacterized protein
STRING	XP_006495058.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-90	sequence-specific DNA binding transcription factors