PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3186_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 339aa    MW: 36992.2 Da    PI: 8.7941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3186_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05115137223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg+ F  ++nL+ H+ + H
  Neem_3186_f_6 115 SCPECGEIFMKPENLELHQAVrH 137
                    8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280114137IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369114142IPR007087Zinc finger, C2H2
SuperFamilySSF563999.21E-20145329No hitNo description
Gene3DG3DSA:3.90.228.101.9E-15146312IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKCSGSLCSN TKVMHRPETA AAASPELQRK RASLGSSSKN ESSSRSMKTP LHEINGNEVV  60
SSTNSSLSSS SSINGGMSFR GMPFRRFSGC YECRMVVDPV LGIARDPSLR GSICSCPECG  120
EIFMKPENLE LHQAVRHAAY DKLTVSELGP EDTSKNIVEI IFQSSWLKKQ TPICKIDRIL  180
KVHNTQRTIA RFEDYRESIK AKATKLPKKH PRCIADGNEL LRFHCTTLSC SLGLNGSSNL  240
CNSIPQCNVC SIIKNGFKVA QESSKEVNGN GILTTATSGK AHDKSGVEDR SDSRAMLVCR  300
VIAGRVKKSM EGNLEDYDSM AGAMGVYSNL DELKMGGFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434130.10.0uncharacterized protein LOC18040168
TrEMBLA0A067GZL20.0A0A067GZL2_CITSI; Uncharacterized protein
STRINGXP_006434130.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-80C2H2-like zinc finger protein