PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_3186_f_6

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 339aa MW: 36992.2 Da PI: 8.7941

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3186_f_6	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	115	137	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+ + H Neem_3186_f_6 115 SCPECGEIFMKPENLELHQAVrH 137 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	114	137	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.369	114	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.21E-20	145	329	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.9E-15	146	312	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MKCSGSLCSN TKVMHRPETA AAASPELQRK RASLGSSSKN ESSSRSMKTP LHEINGNEVV 60 SSTNSSLSSS SSINGGMSFR GMPFRRFSGC YECRMVVDPV LGIARDPSLR GSICSCPECG 120 EIFMKPENLE LHQAVRHAAY DKLTVSELGP EDTSKNIVEI IFQSSWLKKQ TPICKIDRIL 180 KVHNTQRTIA RFEDYRESIK AKATKLPKKH PRCIADGNEL LRFHCTTLSC SLGLNGSSNL 240 CNSIPQCNVC SIIKNGFKVA QESSKEVNGN GILTTATSGK AHDKSGVEDR SDSRAMLVCR 300 VIAGRVKKSM EGNLEDYDSM AGAMGVYSNL DELKMGGFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434130.1	0.0	uncharacterized protein LOC18040168
TrEMBL	A0A067GZL2	0.0	A0A067GZL2_CITSI; Uncharacterized protein
STRING	XP_006434130.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-80	C2H2-like zinc finger protein