PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3169_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 549aa MW: 59193.2 Da PI: 8.9302

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3169_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Neem_3169_f_4 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12.4	0.00049	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Neem_3169_f_4 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.8E-7	80	103	No hit	No description
PROSITE profile	PS50157	10.949	81	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	87	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.5E-5	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.8E-7	152	177	No hit	No description
SMART	SM00355	130	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN 60 PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK 120 VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYKCDCGK LFSRRDSFIT HRAFCDVLAE ESARAITANP LFPSQQPGSS ASRMLNVPAQ 240 LQSHGLQLQS LSVKREEDQL HIFNQRPDTN SIPPWLACPS AIAAGPGPPP LDLSSQLFSG 300 SSFSQYNENP SPNPNSTPLS PFQPPTSSPH TSATALLQKA AQMGVTMSKP SPLPAAMLRP 360 HQAHMTENTG STSVATSTAG SGLGLSSRED LAGGFVHSFA SFGNKAAVTS GYMEQFAVSS 420 AGAGAAAAAP SLFHDMMSSL SSATGFDGPS SSFDEALNGI LNPKAYSNFQ ETQLSKRSES 480 QLSRNDHENG AGCRGGGNVG GSDGLTRDFL GLKTFPHRDF VSLAGLDHMN PSSSTYGHQH 540 NQNPKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN  60
PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK  120
VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYKCDCGK LFSRRDSFIT HRAFCDVLAE ESARAITANP LFPSQQPGSS ASRMLNVPAQ  240
LQSHGLQLQS LSVKREEDQL HIFNQRPDTN SIPPWLACPS AIAAGPGPPP LDLSSQLFSG  300
SSFSQYNENP SPNPNSTPLS PFQPPTSSPH TSATALLQKA AQMGVTMSKP SPLPAAMLRP  360
HQAHMTENTG STSVATSTAG SGLGLSSRED LAGGFVHSFA SFGNKAAVTS GYMEQFAVSS  420
AGAGAAAAAP SLFHDMMSSL SSATGFDGPS SSFDEALNGI LNPKAYSNFQ ETQLSKRSES  480
QLSRNDHENG AGCRGGGNVG GSDGLTRDFL GLKTFPHRDF VSLAGLDHMN PSSSTYGHQH  540
NQNPKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	153	214	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-34	153	214	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLKQRTNKVERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012298.2	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A061GL79	0.0	A0A061GL79_THECC; Indeterminate(ID)-domain 7, putative
STRING	EOY29917	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]