PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31430_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 61aa MW: 6821.02 Da PI: 11.0122 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n++ rqvtfskRr+g++KKA+ELS+LCdaev ++ifsstgklye+ss Neem_31430_f_1 10 KIDNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLVIFSSTGKLYEFSS 59 79**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.076 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-29 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.97E-35 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 6.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MGRGKIVIQK IDNSTSRQVT FSKRRKGLIK KAKELSILCD AEVGLVIFSS TGKLYEFSST 60 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426227.2 | 3e-33 | MADS-box transcription factor 23 | ||||
Refseq | XP_006466574.1 | 3e-33 | MADS-box transcription factor 23-like | ||||
Refseq | XP_018813443.1 | 2e-33 | PREDICTED: MADS-box transcription factor 27-like isoform X3 | ||||
Refseq | XP_022741403.1 | 2e-33 | agamous-like MADS-box protein AGL21 | ||||
Swissprot | Q6Z6W2 | 9e-33 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A445LXN7 | 3e-32 | A0A445LXN7_GLYSO; MADS-box transcription factor 27 | ||||
STRING | XP_006466574.1 | 1e-32 | (Citrus sinensis) | ||||
STRING | Bo1g003270.1 | 1e-32 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 9e-33 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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