PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_3104_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 290aa MW: 32781.5 Da PI: 8.8856

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3104_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00021	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Neem_3104_f_3 53 YSCSFCRREFRSAQALGGHMNVH 75 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.18E-6	50	79	No hit	No description
PROSITE profile	PS50157	11.219	53	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEQAGYWMWT KRKHSLSSHF PSPNRYDDSW EEQAFAEDAA GPLGGCIWPP RSYSCSFCRR 60 EFRSAQALGG HMNVHRRDRA RLKQSSSSPQ NEIQHNQYQN NHNNLQNPFA SLSFQYPSQL 120 CTVVYNPNPN SDPAVIPSPS SPSRVSAPAT QVNFPEKTFL HPLSSPIVQQ EQHKSSPNSS 180 PQSWSNLVAD KYYNISDLKN EGKENSKILG SACRVTADYV KTDLSVSLNL VVRRTRPTLS 240 DDKEEAVGCK RRRMETSSLP FFLKPSCKNN TVCESLKDVS SPFFKEAHHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	48	75	2	29	superman protein
2l1o_A	1e-12	48	75	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480886.1	1e-124	zinc finger protein 10
TrEMBL	A0A067EAZ5	1e-124	A0A067EAZ5_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006480886.1	1e-124	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11047	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-27	zinc-finger protein 10