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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30954_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | DBB | ||||||||
Protein Properties | Length: 209aa MW: 22270.3 Da PI: 6.2228 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.5e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Neem_30954_f_1 4 QCNVCEAAEATVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 28.3 | 3.7e-09 | 53 | 95 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +++kC+ ++e +fC +++ llC++C +++H H+ Neem_30954_f_1 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnalvssHQ 95 789*******99*********************5456666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.495 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.90E-8 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.7E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.015 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.0E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.4E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.11E-8 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MKIQCNVCEA AEATVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS SMQMPKCDIC 60 QETSGFFFCL QDRALLCRKC DVAIHTANAL VSSHQRFLLT GVKVGLESAD PGASSSSVKS 120 LSAENISDTK SHSLAKRGTQ MPLAGEYTEV LPANPGGVGD FATTRVSFAG GSAAGSIPSW 180 HMDEFLGLPE LNQNYGFMDN GSSKRLAIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442350.1 | 1e-121 | B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 1e-76 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | V4U094 | 1e-121 | V4U094_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442350.1 | 1e-121 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5606 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-77 | light-regulated zinc finger protein 1 |