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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30834_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HB-other | ||||||||
Protein Properties | Length: 640aa MW: 71790.2 Da PI: 8.7772 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8e-08 | 100 | 156 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ l+ ++e+F + +s++e +e++++ g+t +qVk +F +R + +k Neem_30834_f_1 100 KRPRDLLNPKALKYMQEVFSVKDAISKRESREISAQFGVTVTQVKDFFASQRSRVRK 156 799**************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.382 | 97 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-4 | 99 | 161 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-5 | 100 | 156 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-7 | 100 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.33E-5 | 100 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-7 | 100 | 166 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MSGLYRSRTS SFELDNGGVE EEFFGDGDWE FGGIVSEVSG FAERAFPQPD RAAPKRCCHT 60 MQTNWSQSSF ARNALGFLLM CSDGFPFNKA AGALSIKIGK RPRDLLNPKA LKYMQEVFSV 120 KDAISKRESR EISAQFGVTV TQVKDFFASQ RSRVRKLVRL SREKAIKSNA CKEPQSDVVR 180 IISDSMIPID PVPLSSAGPT SVIPIDHLPL NSIGSLNVEE EPSCSGQDDS LVGIDDLDKH 240 FVENIFSLMR REETFSGQVK LMEWILQIEN SSVLFWFLTK GGVMILATWM SQAADEEQTS 300 VLSVILDVYS HLPLHKAFPE QMSAILQSVK RLRFYRASDL TNRARILLSK WSKLFARSQA 360 LKKPNGTKSC TDSENELILK QRQVLVFFFC LYLQDFFKLF LIVALYTWCS IGEIMADESW 420 QSNNNVSEAS LASSYESSEN LRKLESPQPL KLLTASSDDS ARKNILGASS SLTDNRERRK 480 VQFVEQPGQK MPGRSPQAAR AAPVSQARPM SADDIQKAKL RAMHMQNKYG KMGSSSNGSN 540 EVKTEGLNKL TTTQASIVLP ESKALVRPQI EEHKKAEMVQ SKISCKLESP LDSKQKMDIK 600 VPPEKCNRVL IRWQTPPDYK FVLPFVMNSE LPYGIPDLEI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955203.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-140 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A067HH03 | 0.0 | A0A067HH03_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U5P2 | 0.0 | V4U5P2_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006479899.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444261.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-130 | HB-other family protein |
Publications ? help Back to Top | |||
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