PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_30834_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HB-other

Protein Properties

Length: 640aa MW: 71790.2 Da PI: 8.7772

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30834_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.7	8e-08	100	156	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ l+ ++e+F + +s++e +e++++ g+t +qVk +F +R + +k Neem_30834_f_1 100 KRPRDLLNPKALKYMQEVFSVKDAISKRESREISAQFGVTVTQVKDFFASQRSRVRK 156 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.382	97	157	IPR001356	Homeobox domain
SMART	SM00389	2.1E-4	99	161	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-5	100	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-7	100	160	IPR009057	Homeodomain-like
CDD	cd00086	2.33E-5	100	156	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-7	100	166	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MSGLYRSRTS SFELDNGGVE EEFFGDGDWE FGGIVSEVSG FAERAFPQPD RAAPKRCCHT 60 MQTNWSQSSF ARNALGFLLM CSDGFPFNKA AGALSIKIGK RPRDLLNPKA LKYMQEVFSV 120 KDAISKRESR EISAQFGVTV TQVKDFFASQ RSRVRKLVRL SREKAIKSNA CKEPQSDVVR 180 IISDSMIPID PVPLSSAGPT SVIPIDHLPL NSIGSLNVEE EPSCSGQDDS LVGIDDLDKH 240 FVENIFSLMR REETFSGQVK LMEWILQIEN SSVLFWFLTK GGVMILATWM SQAADEEQTS 300 VLSVILDVYS HLPLHKAFPE QMSAILQSVK RLRFYRASDL TNRARILLSK WSKLFARSQA 360 LKKPNGTKSC TDSENELILK QRQVLVFFFC LYLQDFFKLF LIVALYTWCS IGEIMADESW 420 QSNNNVSEAS LASSYESSEN LRKLESPQPL KLLTASSDDS ARKNILGASS SLTDNRERRK 480 VQFVEQPGQK MPGRSPQAAR AAPVSQARPM SADDIQKAKL RAMHMQNKYG KMGSSSNGSN 540 EVKTEGLNKL TTTQASIVLP ESKALVRPQI EEHKKAEMVQ SKISCKLESP LDSKQKMDIK 600 VPPEKCNRVL IRWQTPPDYK FVLPFVMNSE LPYGIPDLEI

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MSGLYRSRTS SFELDNGGVE EEFFGDGDWE FGGIVSEVSG FAERAFPQPD RAAPKRCCHT  60
MQTNWSQSSF ARNALGFLLM CSDGFPFNKA AGALSIKIGK RPRDLLNPKA LKYMQEVFSV  120
KDAISKRESR EISAQFGVTV TQVKDFFASQ RSRVRKLVRL SREKAIKSNA CKEPQSDVVR  180
IISDSMIPID PVPLSSAGPT SVIPIDHLPL NSIGSLNVEE EPSCSGQDDS LVGIDDLDKH  240
FVENIFSLMR REETFSGQVK LMEWILQIEN SSVLFWFLTK GGVMILATWM SQAADEEQTS  300
VLSVILDVYS HLPLHKAFPE QMSAILQSVK RLRFYRASDL TNRARILLSK WSKLFARSQA  360
LKKPNGTKSC TDSENELILK QRQVLVFFFC LYLQDFFKLF LIVALYTWCS IGEIMADESW  420
QSNNNVSEAS LASSYESSEN LRKLESPQPL KLLTASSDDS ARKNILGASS SLTDNRERRK  480
VQFVEQPGQK MPGRSPQAAR AAPVSQARPM SADDIQKAKL RAMHMQNKYG KMGSSSNGSN  540
EVKTEGLNKL TTTQASIVLP ESKALVRPQI EEHKKAEMVQ SKISCKLESP LDSKQKMDIK  600
VPPEKCNRVL IRWQTPPDYK FVLPFVMNSE LPYGIPDLEI

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955203.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-140	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A067HH03	0.0	A0A067HH03_CITSI; Uncharacterized protein
TrEMBL	V4U5P2	0.0	V4U5P2_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006479899.1	0.0	(Citrus sinensis)
STRING	XP_006444261.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-130	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]