PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3061_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 402aa MW: 45151 Da PI: 6.1392

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3061_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.7	9.6e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk Neem_3061_f_5 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-28	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.563	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.23E-24	2	82	No hit	No description
PRINTS	PR00404	4.1E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEGFLIS 120 SRGTEIQSMQ CYWTNPDKIN SVEHLGQMEN SLREYLNQIR VHKENLGKQQ LMSLECSSQF 180 QHGMHIPFRL GSEQQLQPLS WIPSNDNRPL VLPEDPNLLS HRDVECSGSS SFGSYSGYFG 240 TGKSSEISNS GQESSLLSEL SGTASLRLQL GGQCSYLPYN VNLLNDKFQP VSDMNIQENP 300 VDYHVNGSLE VPRPGYDTTH GSWASTSGPC EVTLFDESVY SQASYFNSTE IQKRRYHPIT 360 DQVAEEVGHE WEIFSSITMD LLILQWSLAI PMSELASEIC IA

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEGFLIS  120
SRGTEIQSMQ CYWTNPDKIN SVEHLGQMEN SLREYLNQIR VHKENLGKQQ LMSLECSSQF  180
QHGMHIPFRL GSEQQLQPLS WIPSNDNRPL VLPEDPNLLS HRDVECSGSS SFGSYSGYFG  240
TGKSSEISNS GQESSLLSEL SGTASLRLQL GGQCSYLPYN VNLLNDKFQP VSDMNIQENP  300
VDYHVNGSLE VPRPGYDTTH GSWASTSGPC EVTLFDESVY SQASYFNSTE IQKRRYHPIT  360
DQVAEEVGHE WEIFSSITMD LLILQWSLAI PMSELASEIC IA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	7e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024956614.1	0.0	agamous-like MADS-box protein AGL30 isoform X3
Swissprot	Q1PFA4	1e-111	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2H5N8Y1	0.0	A0A2H5N8Y1_CITUN; Uncharacterized protein
STRING	XP_006483134.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	5e-79	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]