PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Neem_30332_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 379aa MW: 40690.7 Da PI: 6.1369

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30332_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	35.3	2.3e-11	1	21	32	52
RWP-RK 32 LKriCRqyGIkRWPhRkiksl 52 +KriCRq+GI+RWP+Rki+++ Neem_30332_f_1 1 MKRICRQHGISRWPSRKINKV 21 7******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.593	1	41	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-9	1	21	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.24E-23	276	369	No hit	No description
SMART	SM00666	1.1E-25	283	365	IPR000270	PB1 domain
PROSITE profile	PS51745	26.192	283	365	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.1E-27	284	364	No hit	No description
CDD	cd06407	2.89E-33	284	364	No hit	No description
Pfam	PF00564	9.1E-19	284	364	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGADG TFGLTSLAAS PLPVAVGSIS 60 WPPVLNGSNQ QHSPSSKPSE PLGEKNGSPT YKTLGSDGHA GLDDRLSGGR MSDHKELIHE 120 QNGLSPEIGK GTNSSKTGSG SREESAGSPT SHGSCQGSPA NESTPAKDPL VTSIHEPCFK 180 VGGFPELVFQ PTGELNLSAA FSIPDALVST EPQEPFGGML LEDAGSSKDL RNLCPAAADA 240 IADERLPETS CTNPPCADVS PKQRLASLTQ TMPHVHTRQE MKSMTIKATY REDIIRFRIS 300 LNSGIVELKE EVAKRLKLEL GTFDIKYLDD DHEWVLIACD ADLQECLDIS RSSGSSIIRL 360 SIHDIMPNLG SSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGADG TFGLTSLAAS PLPVAVGSIS  60
WPPVLNGSNQ QHSPSSKPSE PLGEKNGSPT YKTLGSDGHA GLDDRLSGGR MSDHKELIHE  120
QNGLSPEIGK GTNSSKTGSG SREESAGSPT SHGSCQGSPA NESTPAKDPL VTSIHEPCFK  180
VGGFPELVFQ PTGELNLSAA FSIPDALVST EPQEPFGGML LEDAGSSKDL RNLCPAAADA  240
IADERLPETS CTNPPCADVS PKQRLASLTQ TMPHVHTRQE MKSMTIKATY REDIIRFRIS  300
LNSGIVELKE EVAKRLKLEL GTFDIKYLDD DHEWVLIACD ADLQECLDIS RSSGSSIIRL  360
SIHDIMPNLG SSCESTGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439290.2	0.0	LOW QUALITY PROTEIN: protein NLP7
Swissprot	Q84TH9	6e-98	NLP7_ARATH; Protein NLP7
TrEMBL	A0A067GMH3	0.0	A0A067GMH3_CITSI; Uncharacterized protein
STRING	XP_006439290.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-92	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]