PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30289_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YB
Protein Properties Length: 186aa    MW: 20484.8 Da    PI: 7.9594
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30289_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.74.5e-5538133297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf++y+++lk yl++yrelege
  Neem_30289_f_1  38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGE 132
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  Neem_30289_f_1 133 R 133
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5335149IPR009072Histone-fold
SuperFamilySSF471134.19E-4040146IPR009072Histone-fold
PfamPF008088.4E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.8E-197189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.8E-1990108No hitNo description
PRINTSPR006155.8E-19109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVDNIGNNLD REGGCHKYNF AAGASSSVSL AGEDGVIKEQ DRLLPIANVG RIMKQILPPN  60
AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALATL GFDNYADQLK  120
RYLHRYRELE GERASQNKAG NSNTSEGKHE ASNVYRGEPQ GRPAVSASTP LKFNLTDTNS  180
NGSRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4537128192Transcription factor HapC (Eurofung)
4g92_B4e-4537128192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891930.18e-88nuclear transcription factor Y subunit B-4-like
SwissprotO822483e-62NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2N9ECM27e-87A0A2N9ECM2_FAGSY; Uncharacterized protein
STRINGVIT_07s0104g01640.t012e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-64nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]