PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_29679_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 145aa MW: 15920.2 Da PI: 11.7332

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29679_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	70	114	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Neem_29679_a_1 70 HSIAERLRRERIAERMRALQELVPSC-----NKTDRAAMLDEIVDYVKFL 114 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-16	63	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.425	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	66	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.69E-11	69	119	No hit	No description
Pfam	PF00010	6.8E-8	70	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MPSLFPAFGQ LPTQSVRPSP PRPLQVQQQP LQSQPGAGGA XXXXXXXXXP QPPAVRPRVR 60 ARRGQATDPH SIAERLRRER IAERMRALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV 120 LSMSRLGAAG AVAQLVADVP LSSAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	79	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907184.1	4e-65	transcription factor UNE12-like
Swissprot	Q9ZUG9	7e-42	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3BPW1	2e-62	A0A1S3BPW1_CUCME; transcription factor UNE12-like isoform X2
TrEMBL	A0A314YM14	4e-62	A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRING	XP_004171988.1	1e-62	(Cucumis sativus)
STRING	cassava4.1_011595m	1e-61	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	4e-23	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]