PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_29631_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 391aa MW: 43544.9 Da PI: 9.4797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29631_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0017	332	352	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF ++ +++H++++ Neem_29631_f_2 332 TCSQCGKSF-KPEKMHKHMKSC 352 6******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.0E-38	16	173	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEGAAKGNFG GEVRRIHIIY FLSHMGHVEH PHLIRVHHLT RNGVYLRDVK RWLAEVRGKD 60 MPEAFSWSYK RRYKSGYVWQ DLMDDDLITP ISDNEYVLKG SENPSIYGKK NILISRDDQN 120 PIEVEDQHPE QPSLKEEIPR TPNTSPEIFE ESSLFGSDRS SLTDDSMKQL HEEDLLETIK 180 QNTNEKIEKP ENHSTPASFY SNLSFSSSSS SSKSQFAKSK SYSSNGASNM LRNLMKCGAV 240 DTNDAVIVTV NRADKTCLAK SVSISDPGAV ICRGEKLGGS ARVFGTPWNN NQHPQQNRAR 300 KIFDGVTGSK RKNEFGSTKP GSSAYKPVGG PTCSQCGKSF KPEKMHKHMK SCKGMRNLAK 360 TTAAVSAEKT PPQRSFSLSP EKSTSGYFLT G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEGAAKGNFG GEVRRIHIIY FLSHMGHVEH PHLIRVHHLT RNGVYLRDVK RWLAEVRGKD  60
MPEAFSWSYK RRYKSGYVWQ DLMDDDLITP ISDNEYVLKG SENPSIYGKK NILISRDDQN  120
PIEVEDQHPE QPSLKEEIPR TPNTSPEIFE ESSLFGSDRS SLTDDSMKQL HEEDLLETIK  180
QNTNEKIEKP ENHSTPASFY SNLSFSSSSS SSKSQFAKSK SYSSNGASNM LRNLMKCGAV  240
DTNDAVIVTV NRADKTCLAK SVSISDPGAV ICRGEKLGGS ARVFGTPWNN NQHPQQNRAR  300
KIFDGVTGSK RKNEFGSTKP GSSAYKPVGG PTCSQCGKSF KPEKMHKHMK SCKGMRNLAK  360
TTAAVSAEKT PPQRSFSLSP EKSTSGYFLT G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464115.1	1e-123	uncharacterized protein LOC7488155 isoform X1
Refseq	XP_024464116.1	1e-123	uncharacterized protein LOC7488155 isoform X1
TrEMBL	A0A2N9J9K4	1e-123	A0A2N9J9K4_FAGSY; Uncharacterized protein
STRING	GLYMA08G16910.2	1e-114	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10586	2	3