PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29581_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23786.1 Da PI: 7.1272 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37 | 7e-12 | 181 | 201 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK vk+s++pr Neem_29581_f_1 181 EDGYRWRKYGQKAVKNSPYPR 201 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-12 | 165 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-10 | 173 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.574 | 175 | 211 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0033 | 180 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-8 | 181 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSNHEKKASY HYDPFDCNPQ GFNRLGFNFF QDNPSMYNPP TPSENLQAFD PTSYMSFTDC 60 LHGSMDYSSL SRAFDMSCSS SEVITPTMEE SSKKTATVAG ESTAMTTSEN NNPSTPNSSV 120 SSSSNEAGGN EDSGNNKKDK HQKGQEDGDE KSKKVNKPKK EKKQREPRFA FLTKSEIDHL 180 EDGYRWRKYG QKAVKNSPYP RLLFLLNFLH S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF708981 | 1e-33 | JF708981.1 Dimocarpus longan WRKY transcription factor 29-2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437166.1 | 2e-83 | probable WRKY transcription factor 28 | ||||
Refseq | XP_006484858.1 | 2e-83 | probable WRKY transcription factor 28 | ||||
TrEMBL | A0A067F4B5 | 6e-82 | A0A067F4B5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QUL4 | 5e-82 | A0A2H5QUL4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TKS7 | 6e-82 | V4TKS7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006484858.1 | 9e-83 | (Citrus sinensis) | ||||
STRING | XP_006437166.1 | 9e-83 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 8e-26 | WRKY DNA-binding protein 28 |