PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29559_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 27052.5 Da PI: 5.3482 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 14 | 47 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkg 34 +g+W++eEd +l+ +++q G+g +W + ++++g + Neem_29559_f_1 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIG-T 47 79***********************99999999.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.16E-6 | 3 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 5 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.992 | 9 | 61 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.1E-6 | 14 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.0027 | 16 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGTQID HALTSPFTFF 60 LIFPPLFVRK EHQARRGCHL KQEMKRGNEN SNMVPDNNIN NENPYWPELP VLAPVPYSNE 120 EQRFNNHAAI RKFLIKLGGR FSEDNHVIND GKNLHQFPVD ILQAELGEIA YSNPQRLDGL 180 EFFYEEDVLN NKLGAVSGEG VGWGDMSSLV CPPVAPGYED MQQGMLQESA FNELRYPGIH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034713 | 1e-46 | KM034713.1 Jatropha curcas clone JcMYB093 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007018408.2 | 7e-74 | PREDICTED: transcription factor MYB36 | ||||
TrEMBL | A0A061FFF3 | 1e-72 | A0A061FFF3_THECC; Myb domain protein 84 | ||||
STRING | EOY15633 | 2e-73 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17577 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-26 | myb domain protein 84 |