PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29559_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 240aa    MW: 27052.5 Da    PI: 5.3482
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29559_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-081447134
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkg 34
                     +g+W++eEd +l+ +++q G+g +W + ++++g +
   Neem_29559_f_1 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIG-T 47
                     79***********************99999999.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.16E-6351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-9544IPR009057Homeodomain-like
PROSITE profilePS500906.992961IPR017877Myb-like domain
PfamPF002491.1E-61448IPR001005SANT/Myb domain
CDDcd001670.00271647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGTQID HALTSPFTFF  60
LIFPPLFVRK EHQARRGCHL KQEMKRGNEN SNMVPDNNIN NENPYWPELP VLAPVPYSNE  120
EQRFNNHAAI RKFLIKLGGR FSEDNHVIND GKNLHQFPVD ILQAELGEIA YSNPQRLDGL  180
EFFYEEDVLN NKLGAVSGEG VGWGDMSSLV CPPVAPGYED MQQGMLQESA FNELRYPGIH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347131e-46KM034713.1 Jatropha curcas clone JcMYB093 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018408.27e-74PREDICTED: transcription factor MYB36
TrEMBLA0A061FFF31e-72A0A061FFF3_THECC; Myb domain protein 84
STRINGEOY156332e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1757738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-26myb domain protein 84