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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29472_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 103aa MW: 11786.9 Da PI: 6.2687 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.7 | 1.6e-15 | 26 | 82 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++kr+rr+ +NRe+ArrsR+RK+a + eLe + +L e ++L k l ++ ++++ Neem_29472_f_1 26 DDKRARRMLSNRESARRSRRRKQAHLNELESQAGQLRVEHSSLLKGLTDMNHKCDEA 82 69******************************************9888888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-12 | 21 | 80 | No hit | No description |
SMART | SM00338 | 8.4E-15 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 26 | 78 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-12 | 27 | 80 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.76E-11 | 28 | 77 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
GSSRDDSDDD ELDGDMETTE GSDQLDDKRA RRMLSNRESA RRSRRRKQAH LNELESQAGQ 60 LRVEHSSLLK GLTDMNHKCD EAAVNNRILK AEIETLRAKY TSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 47 | RRSRRRKQ |
2 | 42 | 47 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443938.2 | 1e-41 | light-inducible protein CPRF2 isoform X2 | ||||
Refseq | XP_006479610.1 | 1e-41 | light-inducible protein CPRF2 isoform X2 | ||||
Refseq | XP_006479611.1 | 2e-42 | light-inducible protein CPRF2 isoform X3 | ||||
Swissprot | Q6ETX0 | 8e-25 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
Swissprot | Q99090 | 3e-24 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A067FQY4 | 9e-42 | A0A067FQY4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TUM9 | 5e-43 | V4TUM9_9ROSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4TZK9 | 7e-43 | V4TZK9_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006479609.1 | 6e-41 | (Citrus sinensis) | ||||
STRING | XP_006443936.1 | 3e-42 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.3 | 1e-20 | bZIP family protein |
Publications ? help Back to Top | |||
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