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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29319_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12448.2 Da PI: 10.0654 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 6e-14 | 14 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 +W t+E++ll++av+++G+++W+++a +++ + +t+ +c+ +++++ Neem_29319_f_2 14 AWGTWEELLLACAVHRYGNENWSSVATEVQkrssrlQLLTPRSCQQKYRDL 64 7***********************************99**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.65E-7 | 7 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.144 | 7 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.7E-6 | 11 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-7 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-7 | 14 | 64 | No hit | No description |
Pfam | PF00249 | 1.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MDKPSDNFPE KQTAWGTWEE LLLACAVHRY GNENWSSVAT EVQKRSSRLQ LLTPRSCQQK 60 YRDLERRFVP NGAASLADNK SIPWLDELKK LRVAARWLIT RVFPGSTS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429854.2 | 8e-41 | uncharacterized protein LOC18038098 | ||||
TrEMBL | A0A067EGV2 | 2e-39 | A0A067EGV2_CITSI; Uncharacterized protein | ||||
STRING | XP_006492877.1 | 4e-40 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6530 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 5e-25 | DNA-binding bromodomain-containing protein |