![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_29149_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21960.1 Da PI: 10.0559 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.1e-06 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Neem_29149_f_1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Neem_29149_f_1 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 80 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.05E-7 | 80 | 103 | No hit | No description |
Pfam | PF12171 | 2.3E-5 | 81 | 103 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 87 | 122 | 152 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 145 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.05E-7 | 152 | 177 | No hit | No description |
SMART | SM00355 | 130 | 157 | 177 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN 60 PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK 120 VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYKCDCGK LFSR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-21 | 153 | 194 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 1e-21 | 153 | 194 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 107 | 119 | KLKQRTNKVERKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024953394.1 | 1e-125 | protein indeterminate-domain 7 isoform X3 | ||||
Swissprot | Q8H1F5 | 4e-97 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A067GK77 | 1e-122 | A0A067GK77_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067GN79 | 1e-123 | A0A067GN79_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PZ61 | 1e-122 | A0A2H5PZ61_CITUN; Uncharacterized protein | ||||
STRING | XP_006475907.1 | 1e-123 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 2e-96 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|