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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29025_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 503aa MW: 55934 Da PI: 9.33 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 421 | 443 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Neem_29025_f_1 421 HECPICLKVFPTGQALGGHKRSH 443 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.26 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-5 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.15E-6 | 9 | 31 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.15E-6 | 329 | 356 | No hit | No description |
PROSITE profile | PS50157 | 9.91 | 334 | 361 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.8 | 334 | 356 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-10 | 334 | 358 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 336 | 356 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-13 | 420 | 443 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 421 | 443 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 421 | 443 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 423 | 443 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MEEGREFKHV CRFCSKSFPC GRSLGGHMRS HMINNSADDG KFAKKKLSSV KNFITKTNTE 60 INGYGLRENP KKSKKIADSV ADTSLVYEKF CKEGVKGWKT LCGSMKSNSE KERVSNNNSL 120 EDQDSWTSAK LVTESQSDNE TAIPNRRRRS KRRTRYLATA NSSSFSVAND KIGSSSVSEI 180 EIEQEQEEVA MCLMMLSRDL GPIPSGVAES SGNNSLFLEA QIEVENFDGK KKLREKKLES 240 GFVDSENCQF EKRKFEFSAS GISGKGSKTE VSVDLFDKID KVKNSEVELG KNLMKITELN 300 QAQLGSNKNI SGKKKTRDSF NPEFYKDSQK RSKFECASCN KIFQSYQALG GHRASHKKIK 360 GCSASKIDSS ENSIETELSP DPTADSKLIK SINTAINSVN HFALDRDDRA ETSYGALKKR 420 HECPICLKVF PTGQALGGHK RSHLVVGTEA RNPTIVIPEI HNFFDLNLPA PAEEESNAHL 480 GLKPWWISSS SHKHKSIVSL ISN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286224.1 | 0.0 | uncharacterized protein LOC110417943 isoform X1 | ||||
TrEMBL | A0A061FWS6 | 0.0 | A0A061FWS6_THECC; C2H2-like zinc finger protein, putative | ||||
STRING | EOY22000 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16472 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 1e-44 | C2H2-like zinc finger protein |