PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2895_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 479aa    MW: 55028.3 Da    PI: 5.4408
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2895_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.61.4e-2742121186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+++e+laL+++r+em+++++++ lk+plW+evs+k++e g++rs+k+Ckek+en+ k+++++k+g++++      ++++fdql+
  Neem_2895_f_6  42 RWPREETLALLKIRSEMDTAFKDSGLKAPLWDEVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKQGRSGK------SYRFFDQLQ 121
                    8******************************************************************9984......599****98 PP
2trihelix104.38.8e-33307392187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k+ev aLi++r++++ +++++  k+plWee+s +m++ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+ +tcpyf+ql+a
  Neem_2895_f_6 307 RWPKDEVEALIRLRTNLDVHYQENGPKGPLWEEISTAMKKLGYNRSAKRCKEKWENMNKYFKKVKDSNKKR-PEDAKTCPYFSQLDA 392
                    8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.6083599IPR017877Myb-like domain
SMARTSM007171.9E-439101IPR001005SANT/Myb domain
CDDcd122033.92E-2341106No hitNo description
PfamPF138372.9E-1941123No hitNo description
SMARTSM007171.3E-4304366IPR001005SANT/Myb domain
SuperFamilySSF466892.31E-5305366IPR009057Homeodomain-like
PROSITE profilePS500907.851306364IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-5306364IPR009057Homeodomain-like
PfamPF138373.8E-24306393No hitNo description
CDDcd122032.38E-25306371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MESSTLPENP GPVTGNQENG GAEEEEERVK GAEGERNFGG NRWPREETLA LLKIRSEMDT  60
AFKDSGLKAP LWDEVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKQGRS GKSYRFFDQL  120
QALDNNHSFV PFSSPERINL STAMEINPIS EIKNDVQCPI PNPSSSFMDI STSTTSTSSK  180
ETGGSQKKKR KLTGFFERLM KEVMEKQEKL QKKFIEAIEK CEQERVAREE AWKMQELARI  240
TRERELLVQE RSIAAAKDAA VLAFLQKFSE QSSTVQFSES PVPAEKSADR QENGNGGESF  300
MHMGSSRWPK DEVEALIRLR TNLDVHYQEN GPKGPLWEEI STAMKKLGYN RSAKRCKEKW  360
ENMNKYFKKV KDSNKKRPED AKTCPYFSQL DALYKEKTTK KVNDPVNFEL KPEELLMHMM  420
GGQEERQQVE STTDNGESEN VNRRNQEEDR EDNEDNEDDN EQDDYQLVAT NPSSVAIMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427884.10.0trihelix transcription factor GT-2
RefseqXP_006464545.10.0trihelix transcription factor GT-2-like isoform X1
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067ER210.0A0A067ER21_CITSI; Uncharacterized protein
STRINGXP_006464545.10.0(Citrus sinensis)
STRINGXP_006427884.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-75Trihelix family protein