PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28837_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 333aa MW: 38956.1 Da PI: 6.4281

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28837_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.3	1.2e-26	2	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya...........tgkrknr.atks 80 +p GfrF+Ptdeel+ e L++kv+g++ +l+++i e ++y+++P+ L+ +++ e+e y ++ +++ ++ + ++ +r +t + Neem_28837_f_1 2 VPTGFRFNPTDEELI-EILEQKVSGHQmAPLFNFIVERNVYDYDPQYLQwDyTAAVPENERYCYCMKENDSRevtgrgwwkatSHENDSReVTGR 95 589**********.88***996677889***********9533444467789999999888775544444444322255666799 PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g Wkat + k+++sk +++ +g ++ L+f+ + +++++ kt+W+mhe++l Neem_28837_f_1 96 GWWKATSHVKKIYSKnGSRFIGYRRPLTFHrfkdnQRNRSNAIKTNWIMHEFSL 149 ************956667******7776546677788*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.164	2	164	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-28	2	164	IPR003441	NAC domain
Pfam	PF02365	4.6E-16	3	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MVPTGFRFNP TDEELIEILE QKVSGHQMAP LFNFIVERNV YDYDPQYLQW DYTAAVPENE 60 RYCYCMKEND SREVTGRGWW KATSHENDSR EVTGRGWWKA TSHVKKIYSK NGSRFIGYRR 120 PLTFHRFKDN QRNRSNAIKT NWIMHEFSLQ SRTTDWRLCK IKYKGKPSLQ EELENVRNGF 180 KSRNDFEASS YNSGSPIMGM QQQPAQTVEL EQLEIASYDP FFTQIMNTNN SSELENTRNG 240 FKITNDFEIS SSSTTTVMGM RMGMGMQQQQ QQQHSEALEH EQQQLIKASY DPFLTQIPST 300 NNYYDSGNHS HQLEQAADSS VQISFPSNWS WQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	2	171	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	2	171	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	2	171	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	2	171	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-15	2	171	20	174	NAC domain-containing protein 19
3swm_B	2e-15	2	171	20	174	NAC domain-containing protein 19
3swm_C	2e-15	2	171	20	174	NAC domain-containing protein 19
3swm_D	2e-15	2	171	20	174	NAC domain-containing protein 19
3swp_A	2e-15	2	171	20	174	NAC domain-containing protein 19
3swp_B	2e-15	2	171	20	174	NAC domain-containing protein 19
3swp_C	2e-15	2	171	20	174	NAC domain-containing protein 19
3swp_D	2e-15	2	171	20	174	NAC domain-containing protein 19
4dul_A	1e-15	2	171	17	171	NAC domain-containing protein 19
4dul_B	1e-15	2	171	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478770.1	2e-90	NAC domain-containing protein 83-like
Refseq	XP_024043270.1	2e-90	NAC domain-containing protein 83-like
TrEMBL	A0A067DWW2	5e-84	A0A067DWW2_CITSI; Uncharacterized protein
STRING	XP_006478770.1	8e-90	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-22	NAC domain containing protein 94