PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2867_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 305aa MW: 34470.8 Da PI: 6.9878

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2867_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.6	1.8e-17	15	120	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +GfrF+Ptdee++ Lk k + ++++ ++ike++ y+++Pw+Lp + Fs ++ ++tksgyWk tg+ ++++k ++ Neem_2867_f_1 15 RGFRFKPTDEEII-LLLKMKRFDPDFSV-QTIKEIEFYNFDPWELP-----G------FSGIQS---------KKTKSGYWKITGRGSDLKTKnSK 88 7**********.67888888888888.78**********9.....2......554433.........35899****9999998566 PP NAM 98 elvglkktLvfy.kgrapkgektdWvmheyrl 128 ++g kk+L f ++ + k k +W+mhe r Neem_2867_f_1 89 GVIGSKKILSFCpRAPSLKKAKPEWIMHEIRT 120 78******444555667899***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-26	12	136	IPR003441	NAC domain
PROSITE profile	PS51005	20.839	13	138	IPR003441	NAC domain
Pfam	PF02365	5.4E-13	15	119	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MKNGNGNGNG NRQSRGFRFK PTDEEIILLL KMKRFDPDFS VQTIKEIEFY NFDPWELPGF 60 SGIQSKKTKS GYWKITGRGS DLKTKNSKGV IGSKKILSFC PRAPSLKKAK PEWIMHEIRT 120 KDGPFYKDDF VVCRLERRRD KKPSISTSND SESSQEHMVV VQDASPESVL PPNLPLVSNR 180 NHVANKILKL QLLPNQCCDG YGDLDIESLP ELQSPTYPKP GWSYSNSPIN GCDLLNSHCD 240 REQVNDHINS RRAFQTQNEC FFGETGQTLC PEFNSSKSDG GILLEDDSEM DAETINAWVK 300 SLLVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-16	16	139	20	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-16	16	139	20	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-16	16	139	20	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-16	16	139	20	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-16	16	139	23	169	NAC domain-containing protein 19
3swm_B	5e-16	16	139	23	169	NAC domain-containing protein 19
3swm_C	5e-16	16	139	23	169	NAC domain-containing protein 19
3swm_D	5e-16	16	139	23	169	NAC domain-containing protein 19
3swp_A	5e-16	16	139	23	169	NAC domain-containing protein 19
3swp_B	5e-16	16	139	23	169	NAC domain-containing protein 19
3swp_C	5e-16	16	139	23	169	NAC domain-containing protein 19
3swp_D	5e-16	16	139	23	169	NAC domain-containing protein 19
4dul_A	4e-16	16	139	20	166	NAC domain-containing protein 19
4dul_B	4e-16	16	139	20	166	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	142	ERRRDKKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485394.1	4e-67	NAC domain-containing protein 105-like
Refseq	XP_024042303.1	4e-67	NAC domain-containing protein 105-like
TrEMBL	A0A067E037	5e-72	A0A067E037_CITSI; Uncharacterized protein
STRING	XP_006485394.1	2e-66	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	3e-21	NAC domain containing protein 89