PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2841_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TALE | ||||||||
Protein Properties | Length: 684aa MW: 75162.8 Da PI: 7.8845 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.9e-10 | 375 | 412 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + Neem_2841_f_1 375 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 412 554459******************************88 PP | |||||||
2 | BELL | 125.3 | 2.4e-40 | 239 | 310 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi Neem_2841_f_1 239 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 310 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.7E-66 | 162 | 308 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-50 | 167 | 307 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.39 | 353 | 416 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 356 | 420 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-12 | 356 | 417 | No hit | No description |
SuperFamily | SSF46689 | 6.42E-17 | 357 | 422 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 359 | 422 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-18 | 373 | 412 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MATYFPGNPA ELQAQDGLQT LVLMNPTTYV QHQQQFSDAT PPPTQHNNLI FLNSSALSPH 60 APPPPTHTQH FVGIPTTNHD DTISSLHGLL PRVHYNLYNP NYPTPTARDT PRAKQGLSLS 120 LSSQQQAGYG SQGGQAQAVS GEDMRVSGGS ASSGSGVTNG VSGMHSVLLS SKYLKAAQEL 180 LDEVVNVNNS GINIKSELSK KGNGNNNSSS NKVIGESSAA AGDEGEAPGK RAAELTTAER 240 QEIQMKKAKL INMLDEVEQR YRQYHHQMQI VISSFEQAAG IGSAKTYTAL ALKTISKQFR 300 CLKDAITGQI RSANKMLGEE DCLGGKIEGS RLKFVDNHLR QQRALQQLGM IQHNAWRPQR 360 GLPERSVSVL RAWLFEHFLH PYPKDSDKQM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE 420 MYLEEIKEHE QNGSEDKTSK SEHNEDSASK SSARQEKNLV SEKQNAKNFK SNTDNSTNQN 480 VHSAISMSTV PTSPIGRNVR HPSGFSLIGS SELEGLTQGS PKKPRNTEML QSPSSMPPTI 540 NMDIKPGGEP DNDQISMKFD DDRQSRDGYS FIGNQMNFIQ GFGQYPIGEI GRFDAEQFTP 600 RFSGNGVSLT LGLPHCENLS LSATHQTFLP SQNIQLGRRV EIGEANEFGA MNTTPPHSSA 660 AAYENLNIQN RKRFAAQLLP DFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 362 | 420 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 362 | 420 | 5 | 63 | Homeobox protein Meis2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481599.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A067FTF2 | 0.0 | A0A067FTF2_CITSI; Uncharacterized protein | ||||
STRING | XP_006481599.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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