PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_28344_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 259aa MW: 26959.5 Da PI: 4.9318

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28344_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	123	144	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg+ F ++ H+r H Neem_28344_f_1 123 SCYVCGREFQSWKAVFGHMRAH 144 699*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	124	144	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MASPGKSPEK TPQETSRSRN VGSGFSPEHP TVPAGSANVS PTPQQQVEGG DTSLNVEQAA 60 VAGEVAVTQT PATENVEIPA ELPAEQGPHR KRERTETAGA SASGERKQKR KGELVEIPSK 120 SPSCYVCGRE FQSWKAVFGH MRAHKVGEER AASGAFPPPV FTPPGGSPER EQKALQEQLV 180 PTLLDIAQVL ARTQESATGS ASARPSGGEQ QIDLNVQTQE GSPAASAPAS PEKGGTKFDL 240 NRPPPDNGGD DEENAGGAS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467184.1	4e-56	uncharacterized protein LOC102610330
Refseq	XP_024036150.1	4e-56	uncharacterized protein LOC112096741
STRING	XP_006467184.1	2e-55	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	5e-11	C2H2 family protein