PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28239_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 158aa MW: 18175.7 Da PI: 9.6434 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 2 | 43 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++l+++++ +G + W+ I++ +g R++ +c rw ++l Neem_28239_f_1 2 EEDDRLIKYIQTHGARGWRNIPKAIGVCRSPASCHGRWINHL 43 9*************************99***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.942 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 0.11 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-6 | 2 | 43 | No hit | No description |
SuperFamily | SSF46689 | 3.02E-16 | 2 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 2 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.1E-15 | 2 | 59 | No hit | No description |
PROSITE profile | PS50090 | 4.217 | 44 | 85 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.8 | 48 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-8 | 51 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
NEEDDRLIKY IQTHGARGWR NIPKAIGVCR SPASCHGRWI NHLRPNINHS KITQEEEQKI 60 IKIYNAVGTR CLPNRSACHI RNYWRSTIMK KYGNGEIDRY AIDINKPKVL NRDNGEVLKI 120 EEVNKGGGTS TRQMNMYIDE ELDLELRIGP LGQHGAKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 6e-20 | myb domain protein 7 |