PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28203_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 529aa    MW: 59374.6 Da    PI: 4.7555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28203_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10323366755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++  Lr l+P       +Kl+ a+i   A+ Y+k+Lq
  Neem_28203_f_4 323 HAERKRRKKLNDRMYALRALVPII-----TKLDRATIIVDAIAYVKQLQ 366
                     68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-207155IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.526316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.73E-12318368No hitNo description
SuperFamilySSF474591.15E-15319378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-8322366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-14324379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00566463506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAIVQNLMER LRPLVGLKGW DYCILWKLSH DQRFLDWIDC CCAGIDNTQN GDEELHFPVS  60
PVLPCRDVLF QHPRTKFCQL LSLPPSSIPL DSGIYAQTLI SNQPLWLNFS NSSDLDVIEE  120
SPVWTRVLLP VMGGLIELFV TKEVPEDPSI IDFITAQCSV SVEQESMITN TTSINNMDVS  180
SSSVNNVQAN NNFPSQELEN MNVPYDISVD RIHICNSPMN FLQQFGCSTT TPSGSTKRPR  240
NDHKVFFEES QLHDSNVIQK MDAVTNNNNS STANMHDQKD LIKPEKNGRC DSVSDCSDQI  300
DDDDDVVKYR RRTGKGSQAK NLHAERKRRK KLNDRMYALR ALVPIITKLD RATIIVDAIA  360
YVKQLQKQAQ ELQEELEENS DDDEGKKNGN MGNNGNNQNN VKSESLTQNG MVKTELDKSS  420
DVFRMGNGSF LKQDQASGNT NEKGQQMEPQ VEVAQLDGNE LFVKVFCEHK PGGFVKLMEA  480
LNSLGLEVTN ANVTSFRGLV SNVFKVEKRD TEMVQADHDL DRVGYAGLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309330RRRTGKGSQAKNLHAERKRRKK
2324331ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486853.20.0transcription factor ABORTED MICROSPORES
TrEMBLA0A067FL700.0A0A067FL70_CITSI; Uncharacterized protein
STRINGXP_006422575.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-54bHLH family protein