PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28170_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 311aa    MW: 34731.6 Da    PI: 4.6692
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28170_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.63.1e-091351711046
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     + +NR AA rsR+RKk++++ Le k+  Le+e ++L 
  Neem_28170_f_1 135 RLRNRDAAVRSRERKKMYVKDLEMKSRYLEGECRKLG 171
                     68*****************************998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0066131190IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-10135188No hitNo description
PROSITE profilePS502178.623135185IPR004827Basic-leucine zipper domain
PROSITE patternPS000360135148IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.56E-9135186No hitNo description
CDDcd147041.10E-14135182No hitNo description
PfamPF001702.5E-7136173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDMECLVDD IDWENLVTEL MDPSSVEFSP SPDGSASARI GEIESLLMTD NFDDLESNCP  60
SFDDFFTDIL VDTPSPPFGV EIVDLPTDDK DSNGSDESGS ASAEEEKWIL HEISVGTICG  120
GDDVLDNYVC VCTWRLRNRD AAVRSRERKK MYVKDLEMKS RYLEGECRKL GRLLQCVLAE  180
NQALRFSLQP GNAHGASLAK QESAVLLLER WGRRVIVSVD TVEIHNGHIE SLLLGSLLWF  240
LGNMCLFTLP KPIQSKLESV PLVQAEEKAP GNLAQRGAGI NMMIFSVVKS RRCKASRRKM  300
KIHSHVLRVL V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435475.11e-106bZIP transcription factor 60
TrEMBLA0A067HBZ61e-105A0A067HBZ6_CITSI; Uncharacterized protein
TrEMBLV4TB171e-105V4TB17_9ROSI; Uncharacterized protein
STRINGXP_006435475.11e-106(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46342848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.13e-22basic region/leucine zipper motif 60