PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_28119_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 590aa MW: 64938.2 Da PI: 4.2943

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28119_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	88	111	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+ + +H+ + H Neem_28119_f_2 88 FECHKCDMTFDEKDAYLQHLLSfH 111 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.58	88	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.088	88	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.34	135	157	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.767	135	162	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	137	157	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MSGCPGGQHF VSCKEVSGYL QSYFGLHEAH LATDNAGDNI FDEYRAASES LVGITQKEND 60 QRQYNEQGKE VRLLGIDNLA EVQIRDLFEC HKCDMTFDEK DAYLQHLLSF HQRTTRRYRL 120 GSSVGDGVII KDGKFECQFC HKVFHERRRY NGHVGIHVRN YVRGIEPPGR SRLQNKNESP 180 TRAEFPARAE FPTRDELPTR DEFPARISKM DALIEIAQNS ILETSSARSN VEPDGGSGTD 240 KLNQVSNPEL PASASDHELT SDSALSEPEV DDDMINANLD QESYQQNNDY KVTNEKMETI 300 DDASNLMDVK IDSCVDPAAV LPTDEQNGYS SETSGEKGGL AFIADEIDKS GIELEGGCEI 360 HSHGQLINQK ACPLETNVNL GCSNAVEHGE PDEMNDISIK LEDDFGCNNV GFANDEIPVT 420 VAQNLEENLP NHGVSKLSMS MLEPSRGFPA PNALPIQEED DDGPRAEQRH SSSATGFEEL 480 KFDKIEQNLK YGFESGQAKE PISQPEVPNN AGISEGSYGS SSAQLQSSEA VMLSRDGDDN 540 LTNCVWCGME FRHEEGVDSE IQQMQSDSVG YMCPTCKAKI SGPLTVLGGG

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MSGCPGGQHF VSCKEVSGYL QSYFGLHEAH LATDNAGDNI FDEYRAASES LVGITQKEND  60
QRQYNEQGKE VRLLGIDNLA EVQIRDLFEC HKCDMTFDEK DAYLQHLLSF HQRTTRRYRL  120
GSSVGDGVII KDGKFECQFC HKVFHERRRY NGHVGIHVRN YVRGIEPPGR SRLQNKNESP  180
TRAEFPARAE FPTRDELPTR DEFPARISKM DALIEIAQNS ILETSSARSN VEPDGGSGTD  240
KLNQVSNPEL PASASDHELT SDSALSEPEV DDDMINANLD QESYQQNNDY KVTNEKMETI  300
DDASNLMDVK IDSCVDPAAV LPTDEQNGYS SETSGEKGGL AFIADEIDKS GIELEGGCEI  360
HSHGQLINQK ACPLETNVNL GCSNAVEHGE PDEMNDISIK LEDDFGCNNV GFANDEIPVT  420
VAQNLEENLP NHGVSKLSMS MLEPSRGFPA PNALPIQEED DDGPRAEQRH SSSATGFEEL  480
KFDKIEQNLK YGFESGQAKE PISQPEVPNN AGISEGSYGS SSAQLQSSEA VMLSRDGDDN  540
LTNCVWCGME FRHEEGVDSE IQQMQSDSVG YMCPTCKAKI SGPLTVLGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492635.1	0.0	uncharacterized protein LOC102626569 isoform X1
TrEMBL	A0A2H5PST3	0.0	A0A2H5PST3_CITUN; Uncharacterized protein
STRING	XP_006492635.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15407	2	3