PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_279_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 365aa    MW: 39904.9 Da    PI: 4.547
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_279_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16217253135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Neem_279_f_4 217 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 253
                   *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.3E-777112IPR010399Tify domain
PROSITE profilePS5132013.11777112IPR010399Tify domain
PfamPF062003.7E-1080111IPR010399Tify domain
PfamPF062037.3E-15145186IPR010402CCT domain
PROSITE profilePS5101712.719145187IPR010402CCT domain
SMARTSM004011.1E-9211264IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11212261No hitNo description
Gene3DG3DSA:3.30.50.109.0E-15215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.53E-16216260No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003207.1E-14217253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEEHPRA PIQIEDEDGE YEDCDGMDDA EEGNVNSLNI INNTNNSNIS  60
HNSSVVNVAE HGVVVAAASR TSELTLSFEG EVYVFPAVTP EKVQAVLLLL GGRDIPTGVP  120
TVEVPYDQSS RGVGDTPKRS NLSRRIASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK  180
NGQFASLKES SGASHWDSSQ GGLQDGTPRP ETVIRRCQHC GVSENNTPAM RRGPAGPRTL  240
CNACGLMWAN KGTLRDLSKG GRNLSMDQIE PETPMDVKPS IMEGEFSGNH DEHGTPEDPS  300
KAVDEGSNNP SIDPDEEDMH GTAEDLTHSL PMGLVHSSAD DDEQEPLVEL ANPSDTDIDI  360
PSNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139DTPKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472433.10.0GATA transcription factor 24-like isoform X1
RefseqXP_024952243.10.0GATA transcription factor 24-like isoform X1
TrEMBLA0A067GNE40.0A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5080.0V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-72ZIM-like 1