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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_27801_f_1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
Whirly |
| Protein Properties |
Length: 163aa MW: 17655.3 Da PI: 10.2239 |
| Description |
Whirly family protein |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 195.5 | 7.7e-61 | 24 | 160 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
svyk+kaa++v++v+ptf++ dsg lk+kr+G +ll++ +a++erky+Wek+q+fals+tev++l+ +++++s+effhdp++ +sn+G+vrk+l+
Neem_27801_f_1 24 SVYKGKAAFSVDPVLPTFTKTDSGFLKVKRKGVILLTFWPAIGERKYNWEKRQNFALSPTEVGSLITMGPNDSSEFFHDPGMLSSNAGQVRKSLS 118
79********************************************************************************************* PP
Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
++ l+dG G+f++l+v+ns++k+ e+++vPv+ aefav++++
Neem_27801_f_1 119 IKALADGNGYFISLNVSNSILKTSERLVVPVTAAEFAVMKTA 160
****************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MSQAGMSTTS QDVSAKSRVF APYSVYKGKA AFSVDPVLPT FTKTDSGFLK VKRKGVILLT 60
FWPAIGERKY NWEKRQNFAL SPTEVGSLIT MGPNDSSEFF HDPGMLSSNA GQVRKSLSIK 120
ALADGNGYFI SLNVSNSILK TSERLVVPVT AAEFAVMKTA CSV
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 3e-76 | 18 | 162 | 10 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 3e-76 | 18 | 162 | 10 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 3e-76 | 18 | 162 | 10 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 3e-76 | 18 | 162 | 10 | 154 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
