PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_27727_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GATA

Protein Properties

Length: 293aa MW: 32479.7 Da PI: 9.3311

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_27727_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.4e-19	162	195	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Neem_27727_f_1 162 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 195 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.75E-13	155	198	No hit	No description
SMART	SM00401	1.6E-19	156	207	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.954	156	192	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.7E-16	160	196	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.83E-12	161	191	No hit	No description
PROSITE pattern	PS00344	0	162	187	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	7.3E-17	162	195	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTPIHLIPAP SPFQLAELKD EQQYLNLYLH SNSHLPPSSS LISCPIQYQT MIKLEVPQQH 60 GQKARTSHGG SSDDLQMLPS SSTQPTMSMN NKTREVGEGS TSDNGSSSKW MSSKMRLMQK 120 MTNSNCTGTD ESVKTTQKLQ YQLHDNNEVN SFNNSNNTIR VCSDCNTTTT PLWRSGPRGP 180 KSLCNACGIR QRKARRAMEA AAAGNGAISS TDTPCSKMKL HTKDKKWRTN HAAQYKKQCK 240 SPDPPHHQGQ RKLCFNDFAL TLSKNSALKQ VLPQDVEEAA ILLMELSCGF IHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475928.1	6e-89	putative GATA transcription factor 22 isoform X2
TrEMBL	A0A067GN40	1e-87	A0A067GN40_CITSI; Uncharacterized protein
TrEMBL	V4UNS5	1e-87	V4UNS5_9ROSI; Uncharacterized protein
STRING	XP_006475927.1	4e-88	(Citrus sinensis)
STRING	XP_006450837.1	4e-88	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16433	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	1e-19	cytokinin-responsive gata factor 1