PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2764_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 342aa    MW: 38302.6 Da    PI: 7.8339
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2764_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.21.3e-1075149277
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                    W+ +e l L++    +e + +++ +  ++W+ +s+++ +  + r+ +qC+ kw++l  +y  i +++++  ++ s+
  Neem_2764_f_1  75 WSTKEALILVNEIAAVEADCSKALSSYQKWKIISENCTALDVPRTLNQCRRKWDSLLADYNSIIRSRINS-CRFSE 149
                    **************************************************************99998874.55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-474132IPR009057Homeodomain-like
PfamPF138373.7E-874140No hitNo description
PROSITE profilePS500907.00475131IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MFGLDLRVLV ILALASGNAL AGLGSGSQPK VDKSRWVAKR TVRRTQCLLF AESRACALTG  60
SSGSRCTRSQ VGPDWSTKEA LILVNEIAAV EADCSKALSS YQKWKIISEN CTALDVPRTL  120
NQCRRKWDSL LADYNSIIRS RINSCRFSES ESLPPNFDHD LFKAIDNFVR ENESQSDTEP  180
DSDPEAETEA ELSEVVAPIG CKRRRLRSVP MRHCVEERLL KSNLQEKHQK ISSEEEFRNS  240
HVVEEKTQKG QVEKKPHKSR VKGKIAISIE AKEQMIVAKL HKNAVLIHDI VTENADYSAA  300
EVNCVRVPDI QSQVIRRQGD RLIACLGEIV STLNQFAVQE CE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483638.12e-98uncharacterized protein LOC102622170
RefseqXP_006483639.12e-98uncharacterized protein LOC102622170
RefseqXP_024957123.12e-98uncharacterized protein LOC102622170
TrEMBLA0A2H5NX192e-97A0A2H5NX19_CITUN; Uncharacterized protein
STRINGXP_006483638.16e-98(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.15e-62sequence-specific DNA binding transcription factors