PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27639_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 435aa MW: 48508.4 Da PI: 9.0649 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 108 | 149 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++++ + + Ia +++ Rt +++k+r+++ Neem_27639_f_1 108 WTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 149 *******************.*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 5.3E-31 | 80 | 154 | IPR032563 | DAMP1, SANT/Myb-like domain |
SuperFamily | SSF46689 | 1.47E-6 | 104 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-6 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-6 | 107 | 151 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 3.02E-19 | 108 | 150 | No hit | No description |
Pfam | PF05499 | 2.0E-6 | 298 | 360 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDAKDILGLP KTQLPITQEK KSRPQKEPQR KPDGISREVY ALTGGLAPLM PSIDVSQLKK 60 RPPSDEKVRV VNGIPPTGDY SFAKYNKSVD VVKYTDEEYE KYLTDPMWTK EETDQLFDLC 120 ERFDLRFIVI ADRFPSSRTV EELKDRYYSV SRAILIARAP SPGDVSVHPL VKEPYNVAQE 180 VERKRALSMV LSQTKQQERK DAEVLAEAKR ITESRMAARA AEEPELPVAS NVGLESADRA 240 VVLGDTVSPS SNVQLPSAAI VPSTSIMDDS ASTLASLRML RVYLRTYALE QMVQAASSSA 300 GLRTIKRVEQ TLQDLGVNLK PRVPTKAVCA EHLELRKEIL TLLNLQKQLQ YKEAEGSSYR 360 DGSYIDMPGT PKRSQRAGEQ DRTFVPDSIS FGGNILVDVA VLQYILCIRY GPGRLSEAPS 420 SPAHKRPRKM KASDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 6e-22 | 79 | 159 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 6e-22 | 79 | 159 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC121546 | 2e-41 | KC121546.2 Quercus suber DNA methyltransferase associated protein 1 (DMAP1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444556.1 | 0.0 | SWR1-complex protein 4 isoform X1 | ||||
Refseq | XP_006492372.1 | 0.0 | SWR1-complex protein 4 isoform X1 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | V4U6K6 | 0.0 | V4U6K6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006492372.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444556.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8543 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Publications ? help Back to Top | |||
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