PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27620_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 116aa    MW: 12979.7 Da    PI: 8.6813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27620_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-081155344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W+ Iar +g  ++  ++k ++
   Neem_27620_f_2 11 SWTPKQNKLFEKALALYDKDtpdRWENIARALGGAKSVAEVKRHY 55
                     7********************************889********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.55763IPR017884SANT domain
SMARTSM007173.2E-6861IPR001005SANT/Myb domain
SuperFamilySSF466892.22E-111067IPR009057Homeodomain-like
PfamPF002491.7E-51155IPR001005SANT/Myb domain
CDDcd001671.82E-51255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MSSSRNSSSS SWTPKQNKLF EKALALYDKD TPDRWENIAR ALGGAKSVAE VKRHYEILVE  60
DLNHIESGRV PIPNYKCTGS TYNASHEESY GKAEKLVKGD REIIIAALII CKLINL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30180178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423283.13e-43protein RADIALIS-like 3
RefseqXP_006469147.13e-43protein RADIALIS-like 3
SwissprotQ1A1739e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067E8G37e-42A0A067E8G3_CITSI; Uncharacterized protein
TrEMBLA0A2H5PY897e-42A0A2H5PY89_CITUN; Uncharacterized protein
TrEMBLV4RQ207e-42V4RQ20_9ROSI; Uncharacterized protein
STRINGXP_006469147.11e-42(Citrus sinensis)
STRINGXP_006423283.11e-42(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-33RAD-like 6