PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26798_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 317aa    MW: 33904.8 Da    PI: 9.0652
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26798_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-3973133262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++
  Neem_26798_f_1  73 PEAPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 133
                     67889*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3457128IPR003851Zinc finger, Dof-type
PfamPF027019.3E-3376131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.66577131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWHQQPN HHQQGTGNEN PQFPPLPPAS HVVGAAAGGP GGAGSIRPGS  60
MADRARLAKV PQPEAPLKCP RCDSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV  120
PVGGGCRRNK KNKSSSSKSV VNTEKQISSN STSALPSEII GHLPQQTPQL PLMTSLHTLS  180
QYNLGNLGLS FGGIQAQIGA SSVGSSHTDV GFQIASNSSM SSAIFSAGGV QQFPFFEPPP  240
TGLYPFQSEG IEASSSIVGS MTSNSRVSEQ APVKMEDPQG LNSSRQFMGI AENNQYWSAN  300
NWTDLPGLNC SSANHLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278243.11e-149dof zinc finger protein DOF2.2 isoform X1
TrEMBLA0A061H0301e-146A0A061H030_THECC; OBF-binding protein 3, putative isoform 1
STRINGEOY340691e-147(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-50OBF-binding protein 3