PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2659_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 314aa    MW: 35957.4 Da    PI: 4.5849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2659_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM292.9e-093910167128
            NAM  67 kyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++g+r nr+++sg+W+     k+v++   +++  g kk + + +g++++ ++  W+m ey++
  Neem_2659_f_2  39 LTPNGSRYNRKIASGVWQGEDGAKAVMAYggSKQILGFKKRFRYEDGNNSE-QNGGWIMYEYTI 101
                    5689**************999999999986666779********9998888.89********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.8151125IPR003441NAC domain
PfamPF023652.2E-144101IPR003441NAC domain
SuperFamilySSF1019411.11E-194124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPKVGYRFRP TEQELVNYFL YNKITQNRVL DDEDGLKKLT PNGSRYNRKI ASGVWQGEDG  60
AKAVMAYGGS KQILGFKKRF RYEDGNNSEQ NGGWIMYEYT INPSLLGEQY SHKATDYVVC  120
SIKKNEKGQR NEKADLGKKQ RKSKQIGENN EPGKGATGWK RKLKETATSN NNDDHGDKGV  180
ENKRLKSEQE AVRIEQNQLV ELSCANDVLQ VLRSEETDSN SDFSEVPIEY LLKCITFDFE  240
DPVSNSNQSG EVNADYYIHE GDEWSQNTHL MGEQEGEEET SQEIESEAET QPLLDVEDFF  300
TDIDEEFQRI FGKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015380915.14e-64NAC domain-containing protein 53-like
RefseqXP_015382069.11e-64NAC domain-containing protein 53-like
TrEMBLA0A2H5QWR04e-55A0A2H5QWR0_CITUN; Uncharacterized protein
STRINGXP_006492969.11e-63(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-10vascular related NAC-domain protein 7