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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_25813_f_1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
YABBY |
| Protein Properties |
Length: 129aa MW: 14121.2 Da PI: 6.7323 |
| Description |
YABBY family protein |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 59 | 2e-18 | 14 | 56 | 5 | 47 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls 47
se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l
Neem_25813_f_1 14 PPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSF 56
579************************************9854 PP
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| 2 | YABBY | 50.2 | 1e-15 | 74 | 102 | 135 | 163 |
YABBY 135 eeiqrikasnPdishreafsaaaknWahf 163
eeiqrika+nP+i hreafs+aaknWa +
Neem_25813_f_1 74 EEIQRIKAANPEIPHREAFSTAAKNWARY 102
9**************************76 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 129 aa
Download sequence Send
to blast |
MSLEENISMD LQVPPSEHLC YVRCNFCNTV LAVGIPCKRL LDTVTVKCGH CSNLSFLSTK 60
PPQQGPCQMS LTFEEIQRIK AANPEIPHRE AFSTAAKNWA RYIPNSLTGS SSGSSSNLPE 120
AEAALIYAF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
| Publications
? help Back to Top |
- Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
Ann. Bot., 2014. 114(7): p. 1535-44
[PMID:24989787] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
Nat Commun, 2017. 8(1): p. 1125
[PMID:29066759] - Yamaguchi N, et al.
Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
Nat Commun, 2018. 9(1): p. 5290
[PMID:30538233]
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