PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2566_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 309aa    MW: 34332.5 Da    PI: 6.7971
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2566_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.5e-11174217548
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                    kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Neem_2566_f_3 174 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 217
                    8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-13170234IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622172224IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.86E-11174228No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-11174225No hitNo description
PfamPF001702.4E-9174217IPR004827Basic-leucine zipper domain
CDDcd147031.16E-22175225No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAQLPPKIPN MTPAWPDFPH QKMQPMAANI SSNSQNPSWV DEFLDFSSAK RGTHRRSVSD  60
SVAFLEAPML DECRGSGAAP GSGNNNEFDK FDDEQFMSMF TDDMPNAVAP TLSSSNPSSP  120
SDHNSIYDEK DTPPDQKPQI RKESDEVQSQ CKTEAQALPS SAANNSSDRI IDPKRVKRIL  180
ANRQSAQRSR VRKLQYISEL ERSVTSLQAE VSVLSPRVAF LDHQRLLLNV DNSALKQRIA  240
ALAQDKIFKD AHQEALKREI ERLRQVYHQQ NLKKMENGGA SPAPAPAPPQ AAAEAKACMP  300
MEKEQLLNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469052.11e-173basic leucine zipper 61
SwissprotQ9M2K41e-128BZP61_ARATH; Basic leucine zipper 61
TrEMBLV4THT81e-168V4THT8_9ROSI; Uncharacterized protein
STRINGXP_006469052.11e-173(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-115bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]