PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_2566_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 309aa MW: 34332.5 Da PI: 6.7971

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2566_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.5e-11	174	217	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Neem_2566_f_3 174 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 217 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-13	170	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	172	224	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-11	174	228	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-11	174	225	No hit	No description
Pfam	PF00170	2.4E-9	174	217	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.16E-22	175	225	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAQLPPKIPN MTPAWPDFPH QKMQPMAANI SSNSQNPSWV DEFLDFSSAK RGTHRRSVSD 60 SVAFLEAPML DECRGSGAAP GSGNNNEFDK FDDEQFMSMF TDDMPNAVAP TLSSSNPSSP 120 SDHNSIYDEK DTPPDQKPQI RKESDEVQSQ CKTEAQALPS SAANNSSDRI IDPKRVKRIL 180 ANRQSAQRSR VRKLQYISEL ERSVTSLQAE VSVLSPRVAF LDHQRLLLNV DNSALKQRIA 240 ALAQDKIFKD AHQEALKREI ERLRQVYHQQ NLKKMENGGA SPAPAPAPPQ AAAEAKACMP 300 MEKEQLLNV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469052.1	1e-173	basic leucine zipper 61
Swissprot	Q9M2K4	1e-128	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	V4THT8	1e-168	V4THT8_9ROSI; Uncharacterized protein
STRING	XP_006469052.1	1e-173	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-115	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]