PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25494_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 666aa MW: 74524.8 Da PI: 7.4714

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25494_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	31.2	5.9e-10	19	44	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 ++fDe+krsCrr+L++hn+rrr+k+ Neem_25494_f_1 19 KNFDEGKRSCRRKLERHNNRRRRKSV 44 68********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.853	1	42	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-7	19	45	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MVEVIVTIID LPSVLGLSKN FDEGKRSCRR KLERHNNRRR RKSVDSKGAV DNEPPGASHS 60 EDIVCDDDAG KDSLCLSSQI TDQETFLEAE DGHVTGLNSA PNAQNVNSDS GISFAASGEI 120 RIDGGKDNSK TSPSPSYCDN KSSYSSMCPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM 180 PVELEGYIRP GCTILTIFVA MPKIMWMKLY ADPIRYVHDF VIAPGRMLSG RGPMFVHLNN 240 MIFHVKDGTS VMKVNVEVQA PRLHYVHPTC FEAGKPMEFV ACGSNLLQSK FRFLISFAGK 300 YLPYVYRIAS PHGETDGDPL TFDHQLYKIR VPHTEPNLFG PAFIEVENES GLSNFIPVLI 360 GDKETCSEMK IIQQRFEASL ITKRSQLMAG DSLSNLCGIS ALRQKTFTEL LVDIAWLLKV 420 PASESFLYFM SSSRVQRFNC LFSFLINNES TVILEKLLQN LKILMDSMEF NSAINGINDA 480 DLGLLFKYMD NAREILQRKL QKDGGLMQHA VNIVQERICG SQSSFQSNLL VPSTSQVRAS 540 ILSYRGSNKM ILDHDLDTRS NTKLGVMVYS AAVDRCETTP LLNKEVIMNV NLIKEWPRKS 600 CGHILSGTVL SSRPAIFVIV MAAVCFGVCV VVLHPQKIKY EAEVTWCTCK VVVHLDPDGR 660 ATWDIA

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MVEVIVTIID LPSVLGLSKN FDEGKRSCRR KLERHNNRRR RKSVDSKGAV DNEPPGASHS  60
EDIVCDDDAG KDSLCLSSQI TDQETFLEAE DGHVTGLNSA PNAQNVNSDS GISFAASGEI  120
RIDGGKDNSK TSPSPSYCDN KSSYSSMCPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM  180
PVELEGYIRP GCTILTIFVA MPKIMWMKLY ADPIRYVHDF VIAPGRMLSG RGPMFVHLNN  240
MIFHVKDGTS VMKVNVEVQA PRLHYVHPTC FEAGKPMEFV ACGSNLLQSK FRFLISFAGK  300
YLPYVYRIAS PHGETDGDPL TFDHQLYKIR VPHTEPNLFG PAFIEVENES GLSNFIPVLI  360
GDKETCSEMK IIQQRFEASL ITKRSQLMAG DSLSNLCGIS ALRQKTFTEL LVDIAWLLKV  420
PASESFLYFM SSSRVQRFNC LFSFLINNES TVILEKLLQN LKILMDSMEF NSAINGINDA  480
DLGLLFKYMD NAREILQRKL QKDGGLMQHA VNIVQERICG SQSSFQSNLL VPSTSQVRAS  540
ILSYRGSNKM ILDHDLDTRS NTKLGVMVYS AAVDRCETTP LLNKEVIMNV NLIKEWPRKS  600
CGHILSGTVL SSRPAIFVIV MAAVCFGVCV VVLHPQKIKY EAEVTWCTCK VVVHLDPDGR  660
ATWDIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	40	RRKLERHNNRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419725.1	0.0	squamosa promoter-binding-like protein 7 isoform X2
TrEMBL	V4S2K0	0.0	V4S2K0_9ROSI; Uncharacterized protein
STRING	XP_006419724.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6358	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	squamosa promoter binding protein-like 7