PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25377_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 34341.4 Da PI: 9.6336 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.4e-15 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky Neem_25377_f_3 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-4 | 23 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.623 | 24 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-9 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.39E-11 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-7 | 28 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-12 | 128 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.758 | 129 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.45E-17 | 130 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-16 | 132 | 184 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.7E-13 | 133 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 136 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.99E-11 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MKWETEVISP SSCLSSSSWL LEESKSTKWT AAENKMFENA LAVYDKESPD RWHKVAAMIP 60 GKTVMDVIKQ YKELEDDISN IEAGLIPIPG YSNSSPFTLE WVSNHSYGGY KQSYGIGGKR 120 SSSVRHAEQE RKKGVPWTEE EHKLFLLGLK KHGKGDWRNI SRNFVTSRTP TQVASHAQKY 180 FIRQLSGGKD KRRASIHDIT TVNLNETRTP SPDNQRTPSP NHSTVLSQQP NSGVLPRTDF 240 QWNQPNNGTT MGFNSTQGNM LMTSPYGINS YGLKMQGQNL QRDAVHEPYF GLQNLAFHMQ 300 YPQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-15 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425017.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_024957447.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-145 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A067FUC6 | 0.0 | A0A067FUC6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NCI3 | 0.0 | A0A2H5NCI3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SCK8 | 0.0 | V4SCK8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006488482.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006425017.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-86 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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