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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2507_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25533.6 Da PI: 10.2281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.9 | 1.7e-22 | 55 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +p+G+rF+P+d+ l +yL+ kv g++ +++ ikevd++++ d+ ++ ++yfF++++++ + + r + g+Wk+tg++ v++k Neem_2507_f_1 55 VPVGIRFKPNDQVLAGYYLAGKVYGRTdGPIFPLIKEVDVHQCLTYDF------GDGKMYFFTHSSTRR---NAELRHVPGGFWKKTGTTSFVKEK 141 599**********************996667778********988888......57799****998865...46788899*************999 PP NAM 96 ..kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++ + + tLv+yk+ +++ ++kt+W+m+ey l Neem_2507_f_1 142 dhGKKPIATTLTLVYYKQdqKSKPAVKTQWLMNEYML 178 777788**********6522555678*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-25 | 52 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.356 | 55 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-16 | 56 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MCRQRRLLKP PIFIFMAAPA TTIIESDQAN KHVPPTPMIS RSVLADDSKI WREKVPVGIR 60 FKPNDQVLAG YYLAGKVYGR TDGPIFPLIK EVDVHQCLTY DFGDGKMYFF THSSTRRNAE 120 LRHVPGGFWK KTGTTSFVKE KDHGKKPIAT TLTLVYYKQD QKSKPAVKTQ WLMNEYMLLD 180 SVQSPKQNDK QSKMLPPWTI CVVYSSNQQP DTKKAVAETQ HRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-12 | 55 | 209 | 15 | 171 | Stress-induced transcription factor NAC1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-16 | NAC domain containing protein 47 |