PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24714_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 19993.4 Da PI: 8.6342 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.3 | 2e-20 | 127 | 163 | 2 | 37 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+ Neem_24714_f_1 127 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQ 163 7***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-21 | 111 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-18 | 119 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.013 | 121 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-17 | 126 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-17 | 128 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAPEQKVELN GMSSSLMSAQ QFMDPRPSAA LNVNDPSVSD DKTAREVSAS PANTAEVISK 60 EHEHPMIKIP GKQAFNNEDG GDQTSQSWGS PRSPNLDQTK NEEQASEAPF RKARVSVRAR 120 SEAPLITDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQKLDDNDH TMPPLTKFSI 180 K |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF709004 | 8e-43 | JF709004.2 Dimocarpus longan WRKY transcription factor 47-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444621.1 | 8e-85 | probable WRKY transcription factor 47 isoform X1 | ||||
Refseq | XP_006492427.1 | 8e-85 | probable WRKY transcription factor 47 isoform X1 | ||||
Refseq | XP_006492428.1 | 7e-85 | probable WRKY transcription factor 47 isoform X2 | ||||
Refseq | XP_024044530.1 | 7e-85 | probable WRKY transcription factor 47 isoform X2 | ||||
TrEMBL | A0A067H452 | 2e-83 | A0A067H452_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NXV6 | 2e-83 | A0A2H5NXV6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U6R2 | 2e-83 | V4U6R2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006492427.1 | 3e-84 | (Citrus sinensis) | ||||
STRING | XP_006444621.1 | 3e-84 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7156 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 5e-37 | WRKY family protein |