PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2455_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 271aa    MW: 32119.8 Da    PI: 6.3764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2455_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.47.7e-2991412128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    p GfrF+Ptdeel+ e L++k++g++++l+++ i e+++yk++P++L+  ++v+ +++e ++++ +++       ++ +  +g Wkatg+ k++++
  Neem_2455_f_1   9 PTGFRFNPTDEELI-ELLQRKASGQEMHLHDHfIVETGLYKLDPQHLQwdHNVALSNNERFYYCLKKSD------SREVLGQGWWKATGHLKKIYK 97 
                    89************.99*********9999888**************9644677788999****98664......344889*************** PP

            NAM  95 k..kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                    +  ++ lvg k+ L+f         + r++k+ kt+W+mhey+l
  Neem_2455_f_1  98 NfnNQLLVGFKRPLTFQrfrddgdiERRRKKAIKTNWIMHEYSL 141
                    9766777**********888877776899999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-325156IPR003441NAC domain
PROSITE profilePS5100532.7228156IPR003441NAC domain
PfamPF023651.0E-159141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MIFTSTTIPT GFRFNPTDEE LIELLQRKAS GQEMHLHDHF IVETGLYKLD PQHLQWDHNV  60
ALSNNERFYY CLKKSDSREV LGQGWWKATG HLKKIYKNFN NQLLVGFKRP LTFQRFRDDG  120
DIERRRKKAI KTNWIMHEYS LESYSTEWRL CKIKYKGKPG AQEANIRNVS LEPAQNLQRI  180
SEASIPHSFG GENHQNERYS SQVDNMYRNE PYNLAELDLQ MEGIENKQQQ QIPLYDPFYG  240
HFDDDQLEHF ADSSEQLFTN IWSWHAEQDG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-18316312171NO APICAL MERISTEM PROTEIN
1ut4_B7e-18316312171NO APICAL MERISTEM PROTEIN
1ut7_A7e-18316312171NO APICAL MERISTEM PROTEIN
1ut7_B7e-18316312171NO APICAL MERISTEM PROTEIN
3swm_A8e-18316315174NAC domain-containing protein 19
3swm_B8e-18316315174NAC domain-containing protein 19
3swm_C8e-18316315174NAC domain-containing protein 19
3swm_D8e-18316315174NAC domain-containing protein 19
3swp_A8e-18316315174NAC domain-containing protein 19
3swp_B8e-18316315174NAC domain-containing protein 19
3swp_C8e-18316315174NAC domain-containing protein 19
3swp_D8e-18316315174NAC domain-containing protein 19
4dul_A7e-18316312171NAC domain-containing protein 19
4dul_B7e-18316312171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950105.12e-82NAC domain-containing protein 83-like
TrEMBLB9HH642e-69B9HH64_POPTR; Uncharacterized protein
STRINGXP_006495018.18e-82(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.13e-19NAC domain containing protein 19