PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24454_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 447aa    MW: 49115.6 Da    PI: 4.9921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24454_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.2e-08352392954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Neem_24454_f_3 352 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 392
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14348407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12351403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5352392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-4365397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDSMASLWSS QRDEIEESFM ISNSNCYGYD GKTDPTEDIF YPIQVLQKAQ ISQVLNSNHE  60
RPQLDGPVST AELAATKSGA TTSWQELSSS PLINGPYNVT NPVGNLVAAA AAEFGIADQL  120
QVIDDGLQNG KPGVSTTCSL ESLDCLLSAT NSNTDTSVED DGISILFSDP RSLWNFGVNS  180
AVSSGESENN ACNARNKNFC CPVNELEETV SHSSSDQYFK NGRIQEEIPR SIKRKNDQTE  240
LQVGTNNAQF HLLQTDSTNV ADGGFKLISE NPPKAKKPRL EQCPSSSNIN FQQPSSSVSS  300
SVEEPDPEAI AHMKEMIYRA AAFRPVNLGL EVVEKPKRKN VRISTDPQTV AARQRRERIS  360
ERIRVLQRLV PGGSKMDTAS MLDEAANYLK FLRSQVKALE NLNHKPDSVN CPPANLAFSS  420
LPLINHNFPM QTHFSVQNPN DIHRPQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294690.11e-180transcription factor bHLH87 isoform X1
RefseqXP_021294691.11e-180transcription factor bHLH87 isoform X1
SwissprotQ8S3D23e-87BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A061GAT21e-177A0A061GAT2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGEOY270041e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]