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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_23729_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 21246.9 Da PI: 7.289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.1 | 1.1e-46 | 7 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 G+rF+P++ee+++++L++k++g +++ ++i+evdi+k+ePw+Lp +++ +++ewyfF k kya++ r++r+tk+gyWk tg+d+++l++ Neem_23729_f_1 7 LGYRFRPSEEEIIMYFLERKMHGLGFPV-HTINEVDICKFEPWELPaQSALLDDEEWYFFNKPTLKYANSARTERTTKAGYWKVTGQDRPILDNr 100 59**************************.78***************555556999*************************************986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++glkk Lvf++grap+g+kt+Wvmhey+ Neem_23729_f_1 101 GKNVIGLKKNLVFHTGRAPNGVKTSWVMHEYHS 133 6778***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.081 | 5 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-49 | 7 | 139 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-22 | 8 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDDINYLGYR FRPSEEEIIM YFLERKMHGL GFPVHTINEV DICKFEPWEL PAQSALLDDE 60 EWYFFNKPTL KYANSARTER TTKAGYWKVT GQDRPILDNR GKNVIGLKKN LVFHTGRAPN 120 GVKTSWVMHE YHSNNASAYQ AYISIYLLDG VKTSWVMHEY HSNNASAYQA FSNYFALPYS 180 VH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-37 | 8 | 132 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043356.1 | 3e-71 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A067H3T1 | 5e-55 | A0A067H3T1_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TC69 | 3e-57 | V4TC69_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491410.1 | 1e-69 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18606 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 4e-42 | NAC family protein |