PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_23334_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GATA

Protein Properties

Length: 303aa MW: 33808.9 Da PI: 9.3533

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23334_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.3	2.4e-19	171	204	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk + Neem_23334_f_1 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.4E-19	165	216	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.545	165	201	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.03E-13	165	205	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.2E-15	169	204	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.60E-13	170	202	No hit	No description
PROSITE pattern	PS00344	0	171	196	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.7E-17	171	204	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
PFPLDLKEDQ QNQHLFILNQ ASASYSSSSS ATSSQTFFEP VHQEQGGCYR RESQQLHHSE 60 DQAKIFVSQA AGSCDHPTAM NESDSHLKLS IWKKEERNEN QRENTSVKWM SSKMRLMKKM 120 MNSDAADTPN NCMQKLEDQK QPSSSSLETD HNSCNNINSY SNNNTNTIRV CADCNTTKTP 180 LWRSGPRGPK SLCNACGIRQ RKARRAIAAA AAAAANGTIL EAHTSSKKNK VQHKDKTSSN 240 NSCLPFKKRC KFTTTPSRGK KNLCFEDLTI ILSKNSAFQR VFPQDEKEAA ILLMALSYGL 300 VHG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914096.1	3e-95	GATA transcription factor 21-like
TrEMBL	A0A1Q3CBS6	3e-99	A0A1Q3CBS6_CEPFO; GATA domain-containing protein
STRING	XP_006475428.1	4e-94	(Citrus sinensis)
STRING	XP_006451458.1	4e-94	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2109	26	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	7e-34	cytokinin-responsive gata factor 1